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berry.phtml  (Softberry Inc)

 
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    Softberry Inc berry.phtml
    Berry.Phtml, supplied by Softberry Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/berry%2Ephtml/berry+phtml/pmc06981192__41467_2020_14372_MOESM3_ESM-13-1-3
    Average 90 stars, based on 1 article reviews
    berry.phtml - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: Characterization of a fungal thioesterase having Claisen cyclase and deacetylase activities in melanin biosynthesis.
    Article Snippet: See also Tables S2 and S3. (http://linux1.softberry.com/berry.phtml) exposed an alternative protein sequence in which the final 17 residues of exon 3 were replaced by a short 14-amino-acid exon 4.

    Article Title: Epigenetic modulation of the protein kinase A RIIα (PRKAR2A) gene by histone deacetylases 1 and 2 in human smooth muscle cells.
    Article Snippet: Foss et al. [13] indicated that this region is GC rich and TATA-less with a CpG island present in the proximal region of the promoter (http://linux1.softberry.com/berry.phtml) (Fig. 1A).

    Article Title: A helitron -induced RabGDIα variant causes quantitative recessive resistance to maize rough dwarf disease
    Article Snippet: For gene prediction, http://linux1.softberry.com/berry.phtml.For gene annotation, https://www.blast2go.com/.For Protein homology modelling, https://www.swissmodel.expasy.org.For Phylogenetic analysis, MEGA 7.0 (https://www.megasoftware.net/).For Nucleotide diversity, ClustalX2 (http://www.clustal.org/) was used to produce a nucleotide alignment matrix, and DnaSP v5.1 (http://www.ub.edu/ dnasp/DnaSP_OS.html) was used for nucleotide diversityanalysis, Tajima’s D test and neutrality test.For Minimum-spanning tree, we used Arlequin3.5 ( http://cmpg.unibe.ch/software/arlequin35/), and visualized under HapStar v0.7 (http://www.fo.am/hapstar).For Multiple comparisons of DSI values, SAS 9.1 (https://support.sas.com/software/index.html).

    Article Title: Cloning and characterization of miRNAs and their targets, including a novel miRNA-targeted NBS-LRR protein class gene in apple (Golden Delicious).
    Article Snippet: Thus, target contigs of Md-miRLn1 to Md-miRLn11 were analyzed by http://linux1.softberry.com/ berry.phtml to predict the gene functions (Supplemental Table 1).



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